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  5. Pir_g50588

Pir_g50588


Description : circadian clock factor *(REVEILLE) & original description: none


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g50588
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.05 OrthoFinder output from all 47 species
AT5G37260 RVE2, CIR1 Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G52660 No alias Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene16814.t1 Aspi01Gene16814 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31228.t1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g024005 No alias circadian clock factor *(REVEILLE) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g275350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Dcu_g03554 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035231001 RVE1 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os05g07010.1 LOC_Os05g07010 transcription factor (MYB-related) 0.05 OrthoFinder output from all 47 species
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.02 OrthoFinder output from all 47 species
Nbi_g29371 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16771 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15968 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51970 RVE1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007140_P003 RVE1, Zm00001e007140 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
Zm00001e021724_P005 LHY1, LHY, Zm00001e021724 transcription factor (MYB-related). circadian clock core... 0.03 OrthoFinder output from all 47 species
Zm00001e037757_P001 Zm00001e037757 transcription factor (MYB-related). REVEILLE circadian... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 76 121
No external refs found!