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  5. Pir_g49927

Pir_g49927


Description : not classified & original description: none


Gene families : OG0000738 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000738_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g49927
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15344.t1 Aspi01Gene15344 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01036076001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037646001 No alias Uncharacterized protein At5g41620 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Len_g29743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_76549g0010 No alias Uncharacterized protein At5g41620 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003714 No alias not classified & original description: CDS=1-960 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015369 No alias not classified & original description: CDS=300-2399 0.03 OrthoFinder output from all 47 species
Solyc08g081830.3.1 Solyc08g081830 Uncharacterized protein At5g41620 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Tin_g01186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006883_P001 Zm00001e006883 Uncharacterized protein At5g41620 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024800_P004 Zm00001e024800 Uncharacterized protein At5g41620 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030712_P001 Zm00001e030712 Uncharacterized protein At5g41620 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0050307 sucrose-phosphate phosphatase activity IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!