AT5G52780

Description : Protein of unknown function (DUF3464)

Gene families : OG_01_0004385 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004385_tree ,
OG_02_0004567 (LandPlants) Phylogenetic Tree(s): OG_02_0004567_tree ,
OG_03_0004117 (SeedPlants) Phylogenetic Tree(s): OG_03_0004117_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G52780
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00210800	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.03	Archaeplastida
Cpa\|evm.model.tig00021434.48	No alias	No description available	0.02	Archaeplastida
Cpa\|evm.model.tig00021759.13	No alias	Photosynthesis.photophosphorylation.photosystem...	0.02	Archaeplastida
GSVIVT01018633001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.07	Archaeplastida
GSVIVT01028843001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.06	Archaeplastida
LOC_Os06g21530.1	No alias	PAM68 protein involved in PS-II assembly	0.11	Archaeplastida
LOC_Os10g38910.1	No alias	PAM68 protein involved in PS-II assembly	0.03	Archaeplastida
Solyc03g007860.1.1	No alias	PAM68 protein involved in PS-II assembly	0.05	Archaeplastida
AMTR_s00048p00210800	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.03	LandPlants
GSVIVT01018633001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.07	LandPlants
GSVIVT01028843001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.06	LandPlants
LOC_Os06g21530.1	No alias	PAM68 protein involved in PS-II assembly	0.1	LandPlants
LOC_Os10g38910.1	No alias	PAM68 protein involved in PS-II assembly	0.03	LandPlants
Mp1g02230.1	No alias	PAM68 protein involved in PS-II assembly	0.02	LandPlants
Solyc03g007860.1.1	No alias	PAM68 protein involved in PS-II assembly	0.04	LandPlants
Zm00001e039016_P001	No alias	PAM68 protein involved in PS-II assembly	0.02	LandPlants
AMTR_s00048p00210800	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.03	SeedPlants
GSVIVT01018633001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.07	SeedPlants
GSVIVT01028843001	No alias	Photosynthesis.photophosphorylation.photosystem...	0.06	SeedPlants
LOC_Os06g21530.1	No alias	PAM68 protein involved in PS-II assembly	0.1	SeedPlants
LOC_Os10g38910.1	No alias	PAM68 protein involved in PS-II assembly	0.03	SeedPlants
Solyc03g007860.1.1	No alias	PAM68 protein involved in PS-II assembly	0.04	SeedPlants
Zm00001e039016_P001	No alias	PAM68 protein involved in PS-II assembly	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006740	NADPH regeneration	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010155	regulation of proton transport	RCA	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of ion transmembrane transport	None	Extended
BP	GO:0036211	protein modification process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0046777	protein autophosphorylation	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1904062	regulation of cation transmembrane transport	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021855	PAM68-like	46	166

External Links

No external refs found!

AT5G52780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation