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  5. Pir_g49216

Pir_g49216 (VRN1, REM39)


Aliases : VRN1, REM39

Description : not classified & original description: none


Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g49216
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01005085001 No alias B3 domain-containing transcription factor VRN1... 0.04 OrthoFinder output from all 47 species
GSVIVT01005087001 No alias B3 domain-containing transcription factor VRN1... 0.03 OrthoFinder output from all 47 species
LOC_Os03g42430.1 LOC_Os03g42430 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
LOC_Os12g40090.1 LOC_Os12g40090 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Solyc01g079560.3.1 Solyc01g079560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc01g096790.4.1 Solyc01g096790 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc02g090170.3.1 Solyc02g090170 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Solyc11g045450.3.1 Solyc11g045450 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 23 110
IPR003340 B3_DNA-bd 212 308
IPR003340 B3_DNA-bd 409 502
No external refs found!