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  5. Pir_g48930

Pir_g48930 (ATCAF1, CAF1)


Aliases : ATCAF1, CAF1

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g48930
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AT4G31010 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene53833.t1 CAF2, ATCAF2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03045 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s1065.g027930 ATCAF1, CAF1 not classified & original description: CDS=49-1527 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 238 321
IPR001890 RNA-binding_CRM 357 439
No external refs found!