Smo413483 (PACid_15414665)


Aliases : PACid_15414665

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator PENTATRICOPEPTIDE REPEAT 596 (PPR596) FUNCTIONS IN: DNA binding INVOLVED IN: biological_process unknown EXPRESSED IN: 23 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885) BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1) Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0 Bacteria - 13 Metazoa - 132 Fungi - 119 Plants - 11568 Viruses - 0 Other Eukaryotes - 237 (source: NCBI BLink). & (loc_os07g12140.1 : 114.0


Gene families : OG_01_0000930 (Gene family) Phylogenetic Tree(s): OG0000930_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo413483
Cluster HCCA cluster: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g17320 Os01g0280400 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
MA_167903g0010 No alias No description available 0.02 Gene family
Smo402234 PACid_15402691 27.3.67 RNA.regulation of transcription.putative... 0.04 Gene family
Smo412643 PACid_15413131 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Zm00001d008224 GRMZM2G005980 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
Zm00001d040475 GRMZM2G130366 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 286
No external refs found!