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  5. Pir_g48313

Pir_g48313


Description : not classified & original description: none


Gene families : OG0001767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g48313

Target Alias Description ECC score Gene Family Method Actions
AT2G43410 FPA RNA binding 0.04 OrthoFinder output from all 47 species
Adi_g089075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g12730.1 LOC_Os09g12730 Flowering time control protein FPA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10435314g0010 FPA Flowering time control protein FPA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g13876 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Ore_g19678 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37666 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g053320.4.1 FPA, Solyc06g053320 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g011050.2.1 Solyc12g011050 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e033753_P002 Zm00001e033753 Flowering time control protein FPA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR012921 SPOC_C 482 596
IPR000504 RRM_dom 35 98
IPR000504 RRM_dom 175 228
No external refs found!