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  5. AT5G48730

AT5G48730


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0003421 (SeedPlants) Phylogenetic Tree(s): OG_03_0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48730
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.07 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.1 Archaeplastida
Gb_14850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.05 Archaeplastida
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.04 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 LandPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.1 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 LandPlants
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 LandPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 LandPlants
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 LandPlants
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 LandPlants
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 LandPlants
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 LandPlants
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 LandPlants
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 SeedPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.1 SeedPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 SeedPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 SeedPlants
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 SeedPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 SeedPlants

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 231
IPR002885 Pentatricopeptide_repeat 431 477
IPR002885 Pentatricopeptide_repeat 155 181
IPR002885 Pentatricopeptide_repeat 316 373
IPR002885 Pentatricopeptide_repeat 243 305
No external refs found!