AMTR_s00001p00272430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.527

Description : Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0002673 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002673_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0001479 (SeedPlants) Phylogenetic Tree(s): OG_03_0001479_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00272430
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.05 Archaeplastida
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 Archaeplastida
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 Archaeplastida
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 Archaeplastida
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 LandPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 LandPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 LandPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 SeedPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.02 SeedPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 723 772
IPR002885 Pentatricopeptide_repeat 408 455
IPR002885 Pentatricopeptide_repeat 653 702
IPR002885 Pentatricopeptide_repeat 338 386
IPR002885 Pentatricopeptide_repeat 482 527
IPR002885 Pentatricopeptide_repeat 235 280
IPR002885 Pentatricopeptide_repeat 201 230
IPR002885 Pentatricopeptide_repeat 621 651
IPR002885 Pentatricopeptide_repeat 306 336
No external refs found!