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  5. Pir_g42887

Pir_g42887 (ATCNGC1, CNGC1)


Aliases : ATCNGC1, CNGC1

Description : cyclic nucleotide-gated cation channel *(CNGC) & original description: none


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g42887

Target Alias Description ECC score Gene Family Method Actions
AT4G01010 ATCNGC13, CNGC13 cyclic nucleotide-gated channel 13 0.02 OrthoFinder output from all 47 species
Aspi01Gene15680.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Gb_41576 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel (CNGC).... 0.05 OrthoFinder output from all 47 species
Pir_g39008 ATCNGC13, CNGC13 cyclic nucleotide-gated cation channel *(CNGC) &... 0.06 OrthoFinder output from all 47 species
Pir_g46569 ATCNGC1, CNGC1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.08 OrthoFinder output from all 47 species
Solyc03g007250.1.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Zm00001e024846_P003 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 78 387
IPR000595 cNMP-bd_dom 480 572
No external refs found!