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  5. Pir_g42875

Pir_g42875 (AFP3)


Aliases : AFP3

Description : transcriptional co-repressor *(AFP/NINJA) & original description: none


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g42875

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00036030 NINJA,... RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
Ceric.04G095100.1 NINJA, Ceric.04G095100 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07044 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30382 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32749 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Solyc05g012210.4.1 AFP2, Solyc05g012210 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Spa_g14832 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e002002_P001 AFP3, Zm00001e002002 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032310 NINJA_B 117 223
IPR012463 Ninja_motif 47 89
IPR032308 TDBD 322 356
No external refs found!