Aliases : CPSF30, ATCPSF30
Description : component *(CPSF30/Yth1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none
Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aob_g28233 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G075600.1 | CPSF30,... | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Cre24.g755647 | CPSF30, ATCPSF30 | 30-kDa cleavage and polyadenylation specificity factor... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g33224 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g23212 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01021617001 | CPSF30, ATCPSF30 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
Gb_34616 | CPSF30, ATCPSF30 | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os06g46400.1 | CPSF30,... | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g10477 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
MA_10428531g0010 | CPSF30, ATCPSF30 | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.01 | OrthoFinder output from all 47 species | |
Mp6g15200.1 | CPSF30, ATCPSF30 | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g04636 | CPSF30, ATCPSF30 | component *(CPSF30/Yth1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g021760.3.1 | CPSF30,... | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
Solyc02g070240.3.1 | CPSF30,... | component CPSF30/Yth1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005543 | phospholipid binding | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051170 | import into nucleus | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007275 | YTH_domain | 257 | 391 |
No external refs found! |