Pir_g41869 (ARF17)

Aliases : ARF17

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g41869
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00168950	HSS, ARF1-BP,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AMTR_s00021p00200760	ARF4,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00211p00025860	MP, IAA24, ARF5,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AT1G35240	ARF20	auxin response factor 20	0.04	OrthoFinder output from all 47 species
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.03	OrthoFinder output from all 47 species
Ala_g02130	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12905	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene55123.t1	ARF6, Aspi01Gene55123	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010950	ARF11	not classified & original description: CDS=1-855	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.03	OrthoFinder output from all 47 species
Azfi_s0185.g056651	ARF6	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.18G034300.1	ARF16, Ceric.18G034300	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g17078	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03681	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07020	ARF10	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22354	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01003591001	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01011008001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
GSVIVT01021553001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01023149001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01027166001	ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_39786	ARF16	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os08g40900.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g10088	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_5089g0010	TIR5, MSG1,...	Auxin response factor 7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Nbi_g13886	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g38754	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g28812	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g40540	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Solyc05g047460.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc08g082630.3.1	ARF9, Solyc08g082630	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g47786	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g55449	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e006640_P002	MP, IAA24, ARF5,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004860	protein kinase inhibitor activity	IEP	HCCA
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
MF	GO:0019210	kinase inhibitor activity	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	163	264
IPR010525	ARF_dom	313	395

External Links

No external refs found!

Pir_g41869 (ARF17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation