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  5. Pir_g41495

Pir_g41495


Description : ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g41495
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Dcu_g12473 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01009918001 PUB8, B80 External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
GSVIVT01026271001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.05 OrthoFinder output from all 47 species
LOC_Os05g30010.1 LOC_Os05g30010 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 OrthoFinder output from all 47 species
Ore_g32668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
Solyc02g069290.3.1 Solyc02g069290 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 135 206
IPR001680 WD40_repeat 833 868
No external refs found!