AT5G45140 (NRPC2)

Aliases : NRPC2

Description : nuclear RNA polymerase C2

Gene families : OG_01_0000520 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000520_tree ,
OG_02_0004157 (LandPlants) Phylogenetic Tree(s): OG_02_0004157_tree ,
OG_03_0004191 (SeedPlants) Phylogenetic Tree(s): OG_03_0004191_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G45140
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00246930	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	Archaeplastida
Cpa\|evm.model.tig00020614.124	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre12.g542800	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
GSVIVT01020543001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
GSVIVT01035963001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
GSVIVT01036596001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01036597001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_05261	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.01	Archaeplastida
Gb_05262	No alias	subunit 2 of Pol III RNA polymerase	0.04	Archaeplastida
LOC_Os03g44484.1	No alias	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.03	Archaeplastida
LOC_Os04g54840.1	No alias	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.03	Archaeplastida
MA_342841g0010	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	Archaeplastida
Mp6g06170.1	No alias	subunit 2 of Pol III RNA polymerase	0.03	Archaeplastida
Pp3c18_11070V3.1	No alias	nuclear RNA polymerase C2	0.04	Archaeplastida
Smo443461	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
Solyc10g078860.2.1	No alias	subunit 2 of Pol III RNA polymerase	0.04	Archaeplastida
Zm00001e005007_P001	No alias	subunit 2 of Pol II RNA polymerase	0.07	Archaeplastida
AMTR_s00020p00246930	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	LandPlants
GSVIVT01036596001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	LandPlants
GSVIVT01036597001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	LandPlants
Gb_05262	No alias	subunit 2 of Pol III RNA polymerase	0.03	LandPlants
LOC_Os03g28960.1	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	LandPlants
Mp6g06170.1	No alias	subunit 2 of Pol III RNA polymerase	0.02	LandPlants
Pp3c18_11070V3.1	No alias	nuclear RNA polymerase C2	0.03	LandPlants
Smo443461	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	LandPlants
Solyc10g078860.2.1	No alias	subunit 2 of Pol III RNA polymerase	0.03	LandPlants
AMTR_s00020p00246930	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	SeedPlants
GSVIVT01036596001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	SeedPlants
GSVIVT01036597001	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	SeedPlants
Gb_05262	No alias	subunit 2 of Pol III RNA polymerase	0.03	SeedPlants
LOC_Os03g28960.1	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	SeedPlants
MA_342841g0010	No alias	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	SeedPlants
Solyc10g078860.2.1	No alias	subunit 2 of Pol III RNA polymerase	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007646	RNA_pol_Rpb2_4	550	609
IPR007642	RNA_pol_Rpb2_2	195	370
IPR007645	RNA_pol_Rpb2_3	449	513
IPR007644	RNA_pol_bsu_protrusion	44	403
IPR007647	RNA_pol_Rpb2_5	632	683
IPR007641	RNA_pol_Rpb2_7	1067	1157
IPR007120	DNA-dir_RNAP_su2_dom	690	1065

External Links

No external refs found!

AT5G45140 (NRPC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation