Pir_g40025

Description : component *(eL22) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000996_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g40025

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00189250	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT3G05560	No alias	Ribosomal L22e protein family	0.1	OrthoFinder output from all 47 species
AT5G27770	No alias	Ribosomal L22e protein family	0.06	OrthoFinder output from all 47 species
Adi_g012189	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g062074	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g106237	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ala_g11886	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g18322	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g38436	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g00408	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g10541	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g24260	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0003.g007793	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.08G045600.1	Ceric.08G045600	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.26G014800.1	Ceric.26G014800	component *(eL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.7	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre07.g357850	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g04863	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g18517	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g27968	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01028021001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01031130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01031158001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01035141001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Gb_08874	No alias	component RPL22 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Gb_36164	No alias	component RPL22 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os03g22340.1	LOC_Os03g22340	component RPL22 of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os07g47710.1	LOC_Os07g47710	component RPL22 of LSU proteome component	0.08	OrthoFinder output from all 47 species
MA_130453g0010	No alias	component RPL22 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp4g02920.1	No alias	component RPL22 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Msp_g03306	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pp3c11_630V3.1	Pp3c11_630	Ribosomal L22e protein family	0.05	OrthoFinder output from all 47 species
Pp3c1_120V3.1	Pp3c1_120	Ribosomal L22e protein family	0.07	OrthoFinder output from all 47 species
Pp3c2_28500V3.1	Pp3c2_28500	Ribosomal L22e protein family	0.07	OrthoFinder output from all 47 species
Pp3c2_28510V3.1	Pp3c2_28510	Ribosomal L22e protein family	0.07	OrthoFinder output from all 47 species
Ppi_g24808	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g13724	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g30822	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g32149	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g47525	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo270704	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g099830.3.1	Solyc01g099830	component RPL22 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc09g075150.3.1	Solyc09g075150	component RPL22 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc09g075155.1.1	Solyc09g075155	component RPL22 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Spa_g05462	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g22846	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g25050	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g36488	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Zm00001e010958_P001	Zm00001e010958	component RPL22 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e035835_P001	Zm00001e035835	component RPL22 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e038221_P001	Zm00001e038221	component RPL22 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0035596	methylthiotransferase activity	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0050497	alkylthioltransferase activity	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002671	Ribosomal_L22e	41	150

External Links

No external refs found!

Pir_g40025

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation