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  5. Pir_g39507

Pir_g39507 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g39507

Target Alias Description ECC score Gene Family Method Actions
AT1G51060 HTA10 histone H2A 10 0.02 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.01 OrthoFinder output from all 47 species
Aspi01Gene00233.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene13890.t1 HTA6, Aspi01Gene13890 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g15481 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26088 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10425800g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
Pp3c10_13610V3.1 GAMMA-H2AX,... gamma histone variant H2AX 0.04 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 126 159
IPR007125 Histone_H2A/H2B/H3 44 123
No external refs found!