Pir_g39286

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g39286

Target	Alias	Description	ECC score	Gene Family Method
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.05	OrthoFinder output from all 47 species
Aop_g07938	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g49076	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0243.g059889	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s2109.g109388	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.02G040500.1	Ceric.02G040500	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g32685	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os08g41810.1	LOC_Os08g41810	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os09g08430.1	LOC_Os09g08430	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Nbi_g27595	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_5840V3.1	Pp3c11_5840	Ribosomal protein L22p/L17e family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_6650V3.1	Pp3c1_6650	Ribosomal protein L22p/L17e family protein	0.01	OrthoFinder output from all 47 species
Ppi_g23134	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g15137	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g071870.3.1	Solyc06g071870	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc06g071880.4.1	Solyc06g071880	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g12589	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g51098	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e003661_P001	Zm00001e003661	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e026882_P002	Zm00001e026882	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	151

External Links

No external refs found!

Pir_g39286

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation