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  5. Pir_g38938

Pir_g38938


Description : not classified & original description: none


Gene families : OG0012786 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012786_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g38938
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Als_g03833 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G060100.1 Ceric.36G060100 not classified & original description: pacid=50568536... 0.03 OrthoFinder output from all 47 species
Dde_g24207 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Msp_g13267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07554 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01331 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023933 CRR22 not classified & original description: CDS=1-1233 0.04 OrthoFinder output from all 47 species
Spa_g07061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 419 467
IPR002885 Pentatricopeptide_repeat 218 264
IPR002885 Pentatricopeptide_repeat 621 669
IPR002885 Pentatricopeptide_repeat 523 553
IPR002885 Pentatricopeptide_repeat 119 144
IPR002885 Pentatricopeptide_repeat 697 719
IPR002885 Pentatricopeptide_repeat 495 520
IPR002885 Pentatricopeptide_repeat 90 109
No external refs found!