AT5G43175


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G43175
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.04 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.04 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os05g04740.2 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g01700.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os10g40740.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.05 Archaeplastida
Mp3g17930.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.03 Archaeplastida
Smo404767 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
Smo409967 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 LandPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 LandPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os10g40740.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 LandPlants
MA_100071g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.03 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.04 LandPlants
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.02 LandPlants
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 SeedPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 SeedPlants
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.02 SeedPlants
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_100071g0010 No alias no hits & (original description: none) 0.03 SeedPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.03 SeedPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 SeedPlants
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.03 SeedPlants
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 148 188
No external refs found!