AMTR_s00014p00175040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00014.59

Description : Putative pectate lyase 2 OS=Arabidopsis thaliana


Gene families : OG_01_0000134 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000134_tree ,
OG_02_0010441 (LandPlants) Phylogenetic Tree(s): OG_02_0010441_tree ,
OG_03_0010429 (SeedPlants) Phylogenetic Tree(s): OG_03_0010429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00014p00175040
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT1G11920 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_02248 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.04 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 1 39
No external refs found!