AT5G42940


Description : RING/U-box superfamily protein


Gene families : OG_01_0000125 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000125_tree ,
OG_02_0000151 (LandPlants) Phylogenetic Tree(s): OG_02_0000151_tree ,
OG_03_0000175 (SeedPlants) Phylogenetic Tree(s): OG_03_0000175_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42940
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00133270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
LOC_Os01g47740.1 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 Archaeplastida
LOC_Os04g10680.1 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 Archaeplastida
Pp3c22_1990V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Zm00001e000545_P002 No alias E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e040588_P001 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 Archaeplastida
LOC_Os01g47740.1 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 LandPlants
Solyc12g088740.2.1 No alias Probable E3 ubiquitin-protein ligase RHG1A... 0.02 LandPlants
GSVIVT01035519001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 SeedPlants
LOC_Os01g47740.1 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 637 678
No external refs found!