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Description : splicing factor *(SLO3) & original description: none
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pir_g38104 | |
| Cluster | HCCA: Cluster_202 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00129420 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00045p00130470 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g49730... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00047p00228510 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g13420,... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00142p00073110 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g73400,... | 0.06 | OrthoFinder output from all 47 species | |
| AT5G18390 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene14744.t1 | Aspi01Gene14744 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene63896.t1 | Aspi01Gene63896 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g06106 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g13495 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_14768 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os08g41380.1 | LOC_Os08g41380 | Pentatricopeptide repeat-containing protein At5g18390,... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g10212 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_12748g0020 | No alias | Pentatricopeptide repeat-containing protein At1g79540... | 0.06 | OrthoFinder output from all 47 species | |
| MA_99974g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g08945 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g34573 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003896 | DNA primase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006801 | superoxide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031179 | peptide modification | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| No external refs found! |