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  5. Pir_g38010

Pir_g38010 (ELF6)


Aliases : ELF6

Description : histone demethylase *(PKDM9) & original description: none


Gene families : OG0004407 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004407_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g38010
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Ala_g07663 ELF6 histone demethylase *(PKDM9) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39866 ELF6 histone demethylase *(PKDM9) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007564001 REF6 RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
LOC_Os12g18150.1 REF6, LOC_Os12g18150 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
MA_625277g0010 REF6 transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Msp_g25734 ELF6 histone demethylase *(PKDM9) & original description: none 0.04 OrthoFinder output from all 47 species
Smo440762 ELF6 RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003349 JmjN 17 50
IPR003347 JmjC_dom 324 443
No external refs found!