AT5G42140


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0000543 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000543_tree ,
OG_02_0000407 (LandPlants) Phylogenetic Tree(s): OG_02_0000407_tree ,
OG_03_0000284 (SeedPlants) Phylogenetic Tree(s): OG_03_0000284_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42140
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00256680 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Zm00001e007456_P003 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
AMTR_s00044p00073920 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.02 LandPlants
GSVIVT01013496001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 LandPlants
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 LandPlants
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.01 LandPlants
Pp3c14_4760V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.01 LandPlants
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 SeedPlants
Zm00001e032303_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0007165 signal transduction ISS Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
MF GO:0035091 phosphatidylinositol binding ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000306 Znf_FYVE 617 683
IPR013591 Brevis_radix_dom 998 1053
IPR000408 Reg_chr_condens 460 507
IPR000408 Reg_chr_condens 398 446
IPR000408 Reg_chr_condens 512 561
IPR000408 Reg_chr_condens 566 613
IPR000408 Reg_chr_condens 343 394
IPR000408 Reg_chr_condens 291 339
IPR001849 PH_domain 13 118
IPR027988 BRX_N 864 899
No external refs found!