Smo409589 (PACid_15403268)


Aliases : PACid_15403268

Description : 27.1.1 RNA.processing.splicing encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing LOCATED IN: nuclear speck EXPRESSED IN: 25 plant structures EXPRESSED DURING: 13 growth stages CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084) BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs


Gene families : OG_01_0003283 (Gene family) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo409589
Cluster HCCA cluster: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021531.8 No alias 27.1.1 RNA.processing.splicing encodes an RS-containing... 0.03 Gene family
LOC_Os01g06290 Os01g0155600 27.1.1 RNA.processing.splicing encodes an RS-containing... 0.02 Gene family
LOC_Os03g17710 Os03g0285900 27.1.1 RNA.processing.splicing encodes an RS-containing... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001878 Znf_CCHC 126 141
No external refs found!