Pir_g37022

Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g37022

Target	Alias	Description	ECC score	Gene Family Method
AT5G60670	No alias	Ribosomal protein L11 family protein	0.01	OrthoFinder output from all 47 species
Aop_g70967	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.15G067600.1	Ceric.15G067600	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01025189001	No alias	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os02g47140.1	LOC_Os02g47140	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os04g50990.1	LOC_Os04g50990	component RPL12 of LSU proteome component	0.01	OrthoFinder output from all 47 species
Lfl_g16793	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Lfl_g22014	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.01	OrthoFinder output from all 47 species
Nbi_g12624	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019962	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Solyc11g069440.1.1	Solyc11g069440	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Spa_g04459	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g22192	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Zm00001e007067_P001	Zm00001e007067	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e008316_P001	Zm00001e008316	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e023297_P001	Zm00001e023297	component RPL12 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	41	110
IPR020784	Ribosomal_L11_N	1	35

External Links

No external refs found!

Pir_g37022

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation