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  5. Pir_g36198

Pir_g36198 (CHB3, ATSWI3D)


Aliases : CHB3, ATSWI3D

Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: none


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g36198

Target Alias Description ECC score Gene Family Method Actions
Zm00001e007799_P001 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 106 191
IPR001005 SANT/Myb 350 391
IPR000433 Znf_ZZ 292 326
IPR032451 SMARCC_C 538 618
No external refs found!