Smo409226 (PACid_15423126)


Aliases : PACid_15423126

Description : 27.2 RNA.transcription RNA polymerase I subunit 43 (RPAC43) FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding INVOLVED IN: transcription EXPRESSED IN: 11 plant structures EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025) BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT1G60850.1) Has 1342 Blast hits to 1342 proteins in 354 species: Archae - 247 Bacteria - 1 Metazoa - 281 Fungi - 345 Plants - 107 Viruses - 0 Other Eukaryotes - 361 (source: NCBI BLink). & (chl4|524203 : 140.0


Gene families : OG_01_0004526 (Gene family) Phylogenetic Tree(s): OG0004526_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo409226
Cluster HCCA cluster: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G60850 ATRPAC42, AAC42 DNA-directed RNA polymerase family protein 0.03 Gene family
Cre07.g313302 No alias 27.2 RNA.transcription RNA polymerase I subunit 43 (RPAC43) 0.03 Gene family
LOC_Os03g18410 Os03g0295400 27.2 RNA.transcription RNA polymerase I subunit 43 (RPAC43) 0.05 Gene family
Solyc12g015780.2.1 Solyc12g015780.2 27.2 RNA.transcription RNA polymerase I subunit 43 (RPAC43) 0.02 Gene family
Zm00001d054013 GRMZM2G025356 27.2 RNA.transcription RNA polymerase I subunit 43 (RPAC43) 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 98 237
No external refs found!