1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g34365

Pir_g34365


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g34365
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223430 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00152p00054630 RHA2A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G49200 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G49230 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G63840 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35000 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G44578 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G46160 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G47560 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G00305 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G09130 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G40070 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17600 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g012488 RHA3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107086 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g39979 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g59747 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aob_g04035 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g01529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12542.t1 Aspi01Gene12542 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene30805.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene45023.t1 Aspi01Gene45023 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48333.t1 RHA3A, Aspi01Gene48333 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0091.g042816 No alias not classified & original description: CDS=1-813 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043306 No alias not classified & original description: CDS=1-900 0.03 OrthoFinder output from all 47 species
Cba_g26664 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.01G091800.1 Ceric.01G091800 not classified & original description: pacid=50591615... 0.03 OrthoFinder output from all 47 species
Ceric.01G098400.1 Ceric.01G098400 not classified & original description: pacid=50591772... 0.03 OrthoFinder output from all 47 species
Ceric.05G094800.1 ATL4H, Ceric.05G094800 not classified & original description: pacid=50578003... 0.04 OrthoFinder output from all 47 species
Ceric.07G058000.1 Ceric.07G058000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.10G020700.1 RHA2A, Ceric.10G020700 not classified & original description: pacid=50612578... 0.03 OrthoFinder output from all 47 species
Ceric.12G015900.1 Ceric.12G015900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.22G061900.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.22G069000.1 Ceric.22G069000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.25G002800.1 Ceric.25G002800 not classified & original description: pacid=50594229... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000367.17 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dac_g14301 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g22588 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g18286 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05771 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g26130 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g30092 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01019530001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01019592001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01028038001 ATL2, TL2 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_04301 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_04642 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_28980 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_30879 XERICO Probable E3 ubiquitin-protein ligase XERICO... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11480.1 LOC_Os01g11480 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g44700.1 LOC_Os02g44700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45780.1 LOC_Os02g45780 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g57460.1 LOC_Os02g57460 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os03g44636.1 LOC_Os03g44636 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g16970.1 LOC_Os04g16970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g49160.1 LOC_Os04g49160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g15170.1 ATL63, TL63,... RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os06g11450.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os06g34530.1 ATL43, LOC_Os06g34530 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g34560.1 ATL43, LOC_Os06g34560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g37760.1 ATL6, LOC_Os08g37760 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os09g29310.1 ATL6, LOC_Os09g29310 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os10g30310.1 LOC_Os10g30310 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g02210.1 LOC_Os12g02210 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g24490.1 LOC_Os12g24490 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g18865 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Len_g38931 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Lfl_g24628 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
MA_10106144g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_10434759g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_129306g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_132693g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_15116g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_223372g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_2639751g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_308999g0010 ATL2, TL2 RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_308999g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_31736g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_37578g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_391590g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_43543g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_465316g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g01610 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g09561 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g38764 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g02997 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g23024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38125 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g41691 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pnu_g02769 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42278 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g54811 ATL2, TL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018006 XERICO not classified & original description: CDS=1-537 0.03 OrthoFinder output from all 47 species
Sam_g06931 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g31319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo39820 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Smo438800 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc02g083660.1.1 Solyc02g083660 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc03g114190.1.1 Solyc03g114190 RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g123690.1.1 Solyc03g123690 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g074820.3.1 Solyc04g074820 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc06g064440.3.1 Solyc06g064440 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc09g066300.3.1 Solyc09g066300 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc10g008080.3.1 Solyc10g008080 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc10g011880.1.1 Solyc10g011880 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc10g081780.3.1 Solyc10g081780 Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g081790.1.1 Solyc10g081790 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g005290.1.1 Solyc11g005290 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g005320.1.1 Solyc11g005320 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc11g073170.1.1 Solyc11g073170 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g087840.1.1 Solyc12g087840 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc12g094690.1.1 Solyc12g094690 RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g02165 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g17415 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e008560_P001 RHA2A, Zm00001e008560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e014286_P001 Zm00001e014286 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e014764_P001 Zm00001e014764 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015259_P001 Zm00001e015259 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015445_P001 BRH1, Zm00001e015445 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e015449_P001 Zm00001e015449 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e015470_P001 ATL8, Zm00001e015470 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e015495_P001 Zm00001e015495 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e017960_P001 RHA3A, Zm00001e017960 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e020958_P001 Zm00001e020958 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e023238_P001 Zm00001e023238 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e030930_P001 ATL3, Zm00001e030930 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e039314_P001 Zm00001e039314 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 77 120
No external refs found!