AT5G38895


Description : RING/U-box superfamily protein


Gene families : OG_01_0000951 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000951_tree ,
OG_02_0000709 (LandPlants) Phylogenetic Tree(s): OG_02_0000709_tree ,
OG_03_0000552 (SeedPlants) Phylogenetic Tree(s): OG_03_0000552_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G38895
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
LOC_Os11g41140.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.05 Archaeplastida
MA_3928558g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002639_P004 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.04 Archaeplastida
Zm00001e012916_P001 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.03 Archaeplastida
LOC_Os11g41140.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.05 LandPlants
LOC_Os11g18947.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 SeedPlants
LOC_Os11g41140.1 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.05 SeedPlants
Solyc08g081300.4.1 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 SeedPlants
Zm00001e002639_P004 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 SeedPlants
Zm00001e012916_P001 No alias Probable E3 ubiquitin-protein ligase RHB1A... 0.02 SeedPlants
Zm00001e021135_P002 No alias E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis... 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide RCA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006499 N-terminal protein myristoylation RCA Interproscan
BP GO:0006914 autophagy RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009733 response to auxin RCA Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009743 response to carbohydrate RCA Interproscan
BP GO:0009873 ethylene-activated signaling pathway RCA Interproscan
BP GO:0010200 response to chitin IEP Interproscan
BP GO:0010286 heat acclimation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 168 209
No external refs found!