AT5G38410

Description : Ribulose bisphosphate carboxylase (small chain) family protein

Gene families : OG_01_0000561 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000561_tree ,
OG_02_0000421 (LandPlants) Phylogenetic Tree(s): OG_02_0000421_tree ,
OG_03_0001423 (SeedPlants) Phylogenetic Tree(s): OG_03_0001423_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G38410
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00079p00061090	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.22	Archaeplastida
Cre02.g120100	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.02	Archaeplastida
Cre02.g120150	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.04	Archaeplastida
GSVIVT01008288001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.16	Archaeplastida
Gb_00380	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	Archaeplastida
LOC_Os12g17600.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	Archaeplastida
LOC_Os12g19381.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.13	Archaeplastida
LOC_Os12g19470.2	No alias	small subunit of ribulose-1,5-bisphosphat...	0.1	Archaeplastida
MA_47626g0010	No alias	small subunit of ribulose-1,5-bisphosphat...	0.13	Archaeplastida
Mp4g06020.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.04	Archaeplastida
Mp4g06030.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.02	Archaeplastida
Mp4g06050.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.07	Archaeplastida
Mp4g10850.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.09	Archaeplastida
Mp4g15070.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.04	Archaeplastida
Pp3c12_11880V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	Archaeplastida
Pp3c13_15786V3.1	No alias	No annotation	0.15	Archaeplastida
Pp3c13_15800V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.18	Archaeplastida
Pp3c13_15910V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.02	Archaeplastida
Pp3c13_15980V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.11	Archaeplastida
Pp3c13_16000V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.16	Archaeplastida
Pp3c13_16130V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.08	Archaeplastida
Pp3c15_22720V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.03	Archaeplastida
Pp3c19_1840V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.08	Archaeplastida
Pp3c22_540V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	Archaeplastida
Pp3c2_4100V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.03	Archaeplastida
Pp3c3_14510V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.25	Archaeplastida
Pp3c3_18750V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.18	Archaeplastida
Pp3c3_20110V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.05	Archaeplastida
Pp3c3_20140V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.14	Archaeplastida
Pp3c4_13260V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	Archaeplastida
Smo147927	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.08	Archaeplastida
Solyc02g063150.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.19	Archaeplastida
Solyc02g085950.4.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.21	Archaeplastida
Solyc03g034220.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	Archaeplastida
Zm00001e009125_P001	No alias	no hits & (original description: none)	0.22	Archaeplastida
Zm00001e024168_P001	No alias	no hits & (original description: none)	0.19	Archaeplastida
AMTR_s00079p00061090	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.19	LandPlants
GSVIVT01008288001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.15	LandPlants
Gb_00380	No alias	small subunit of ribulose-1,5-bisphosphat...	0.15	LandPlants
LOC_Os12g17600.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.15	LandPlants
LOC_Os12g19381.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.12	LandPlants
LOC_Os12g19470.2	No alias	small subunit of ribulose-1,5-bisphosphat...	0.08	LandPlants
MA_47626g0010	No alias	small subunit of ribulose-1,5-bisphosphat...	0.12	LandPlants
Mp4g06020.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.03	LandPlants
Mp4g06050.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.06	LandPlants
Mp4g10850.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.07	LandPlants
Mp4g15070.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.04	LandPlants
Pp3c12_11880V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	LandPlants
Pp3c13_15786V3.1	No alias	No annotation	0.16	LandPlants
Pp3c13_15800V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.16	LandPlants
Pp3c13_15910V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.02	LandPlants
Pp3c13_15980V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.1	LandPlants
Pp3c13_16000V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.14	LandPlants
Pp3c13_16130V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.08	LandPlants
Pp3c19_1840V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.06	LandPlants
Pp3c22_540V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	LandPlants
Pp3c3_12530V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.02	LandPlants
Pp3c3_14510V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.21	LandPlants
Pp3c3_18750V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.16	LandPlants
Pp3c3_20110V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.05	LandPlants
Pp3c3_20140V3.1	No alias	ribulose bisphosphate carboxylase small chain 1A	0.12	LandPlants
Pp3c4_13260V3.1	No alias	Ribulose bisphosphate carboxylase (small chain) family protein	0.02	LandPlants
Smo147927	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.09	LandPlants
Solyc02g063150.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.17	LandPlants
Solyc02g085950.4.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.21	LandPlants
Solyc03g034220.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	LandPlants
Zm00001e009125_P001	No alias	no hits & (original description: none)	0.22	LandPlants
Zm00001e024168_P001	No alias	no hits & (original description: none)	0.18	LandPlants
AMTR_s00079p00061090	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.19	SeedPlants
GSVIVT01008288001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.13	SeedPlants
Gb_00380	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	SeedPlants
LOC_Os12g17600.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.14	SeedPlants
LOC_Os12g19381.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.12	SeedPlants
LOC_Os12g19470.2	No alias	small subunit of ribulose-1,5-bisphosphat...	0.08	SeedPlants
MA_47626g0010	No alias	small subunit of ribulose-1,5-bisphosphat...	0.12	SeedPlants
Solyc02g063150.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.18	SeedPlants
Solyc02g085950.4.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.21	SeedPlants
Solyc03g034220.3.1	No alias	small subunit of ribulose-1,5-bisphosphat...	0.13	SeedPlants
Zm00001e009125_P001	No alias	no hits & (original description: none)	0.22	SeedPlants
Zm00001e024168_P001	No alias	no hits & (original description: none)	0.18	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005840	ribosome	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex	ISS	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	IEP	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010114	response to red light	IEP	Interproscan
BP	GO:0010218	response to far red light	IEP	Interproscan
BP	GO:0015977	carbon fixation	ISS	Interproscan
BP	GO:0015979	photosynthesis	IMP	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	ISS	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
CC	GO:0048492	ribulose bisphosphate carboxylase complex	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080158	obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis	IMP	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR024680	RuBisCO_ssu_N	2	42
IPR000894	RuBisCO_sc_dom	67	175

External Links

No external refs found!

AT5G38410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation