AT5G38070

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG_01_0000436 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000436_tree ,
OG_02_0000506 (LandPlants) Phylogenetic Tree(s): OG_02_0000506_tree ,
OG_03_0008056 (SeedPlants) Phylogenetic Tree(s): OG_03_0008056_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G38070
Cluster	HCCA: Cluster_220

Target	Alias	Description	ECC score	Gene Family Method
Cre09.g400738	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
GSVIVT01028110001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
LOC_Os08g33860.1	No alias	RING-v-class E3 ligase	0.04	Archaeplastida
Solyc04g007600.4.1	No alias	RING-v-class E3 ligase	0.04	Archaeplastida
Solyc08g014080.4.1	No alias	RING-v-class E3 ligase	0.03	Archaeplastida
Zm00001e026209_P003	No alias	RING-v-class E3 ligase	0.03	Archaeplastida
Zm00001e028572_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e031477_P002	No alias	RING-v-class E3 ligase	0.03	Archaeplastida
LOC_Os08g33860.1	No alias	RING-v-class E3 ligase	0.02	LandPlants
Solyc04g007600.4.1	No alias	RING-v-class E3 ligase	0.02	LandPlants
Solyc08g014080.4.1	No alias	RING-v-class E3 ligase	0.03	LandPlants
Zm00001e028572_P001	No alias	no hits & (original description: none)	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	54	99
IPR022143	DUF3675	105	215

External Links

No external refs found!