Smo407495 (PACid_15419124)


Aliases : PACid_15419124

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein FUNCTIONS IN: lyase activity, pectate lyase activity INVOLVED IN: biological_process unknown LOCATED IN: endomembrane system EXPRESSED IN: 20 plant structures EXPRESSED DURING: 6 growth stages CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334) BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1). & (p40973|pel_lillo : 449.0


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo407495
Cluster HCCA cluster: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AT1G14420 AT59 Pectate lyase family protein 0.02 Gene family
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT4G13210 No alias Pectin lyase-like superfamily protein 0.06 Gene family
AT4G13710 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Gene family
AT5G55720 No alias Pectin lyase-like superfamily protein 0.04 Gene family
GSVIVT01000592001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01008053001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01014682001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01020067001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01020068001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os04g05050 Os04g0137201 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os06g05209 Os06g0144200 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g05260 Os06g0144900 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_10428603g0020 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_203992g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g067450.3.1 Solyc02g067450.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g087670.3.1 Solyc02g087670.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g058890.3.1 Solyc03g058890.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g111690.3.1 Solyc03g111690.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc09g091430.3.1 Solyc09g091430.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc11g008140.2.1 Solyc11g008140.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d000216 GRMZM2G323418 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d004448 GRMZM2G131912 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 155 337
No external refs found!