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  5. Pir_g32224

Pir_g32224 (AGL15)


Aliases : AGL15

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g32224
Cluster HCCA: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00228660 AGL15,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AT3G57390 AGL18 AGAMOUS-like 18 0.03 OrthoFinder output from all 47 species
Aob_g19697 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17777.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07874 AGL13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01000802001 SHP2, AGL5 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52340.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g57097 AGL6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011014 AGL9, SEP3 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g09517 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021053_P001 AGL30, Zm00001e021053 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e030839_P001 AGL66, Zm00001e030839 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 96 156
IPR002100 TF_MADSbox 10 57
No external refs found!