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  5. Pir_g30459

Pir_g30459 (ATUPF3, UPF3)


Aliases : ATUPF3, UPF3

Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Pir_g30459

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00188270 ATUPF3, UPF3,... RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Adi_g019348 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ala_g05619 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g35424 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g09824 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11972.t1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011480 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g27966 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cba_g38478 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ceric.07G016200.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dcu_g04069 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ehy_g06979 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
MA_102917g0010 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Ppi_g54665 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc01g103420.4.1 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Tin_g09311 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Zm00001e008047_P001 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Zm00001e040916_P004 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 132 297
No external refs found!