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  5. Pir_g29875

Pir_g29875 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g29875
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AT1G51060 HTA10 histone H2A 10 0.02 OrthoFinder output from all 47 species
AT3G20670 HTA13 histone H2A 13 0.02 OrthoFinder output from all 47 species
AT4G27230 HTA2 histone H2A 2 0.03 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.03 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011321 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g043980 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g070713 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086789 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17952 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23857 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28150 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09992 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30450 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g54113 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene26194.t1 HTA6, Aspi01Gene26194 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45042.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.09G032900.1 HTA7, Ceric.09G032900 histone *(H2A) & original description: pacid=50587494... 0.03 OrthoFinder output from all 47 species
Ceric.25G035000.1 HTA7, Ceric.25G035000 histone *(H2A) & original description: pacid=50593123... 0.03 OrthoFinder output from all 47 species
Ceric.25G059300.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50594046... 0.03 OrthoFinder output from all 47 species
Ceric.26G005600.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599432... 0.04 OrthoFinder output from all 47 species
Ceric.26G005800.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599346... 0.04 OrthoFinder output from all 47 species
Ceric.28G045900.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50570258... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Dac_g06100 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g41140 HTA2 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12969 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00366 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11978 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29975 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01002735001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01002746001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
GSVIVT01025019001 HTA12 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Gb_15897 HTA6 histone (H2A) 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os05g02300.1 HTA12, LOC_Os05g02300 histone (H2A) 0.04 OrthoFinder output from all 47 species
Len_g05493 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39719 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39892 HTA10 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g00069 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06551 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09403 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07187 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14792 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62733 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10764 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29426 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.04 OrthoFinder output from all 47 species
Solyc06g084430.4.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc09g082710.3.1 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03210 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03519 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45415 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45749 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46345 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12865 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 95 128
IPR007125 Histone_H2A/H2B/H3 12 92
No external refs found!