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  5. Pir_g29005

Pir_g29005 (CML41)


Aliases : CML41

Description : calcium sensor *(CML) & original description: none


Gene families : OG0008741 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008741_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g29005
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00067280 CML38,... Putative calcium-binding protein CML19 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
AT5G42380 CML39, CML37 calmodulin like 37 0.03 OrthoFinder output from all 47 species
GSVIVT01010378001 APC1, PC1 Probable calcium-binding protein CML31 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
GSVIVT01010379001 CML38 Probable calcium-binding protein CML31 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
GSVIVT01010380001 No alias Probable calcium-binding protein CML31 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
GSVIVT01010383001 APC1, PC1 Putative calcium-binding protein CML23 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
GSVIVT01010385001 CML41 Putative calcium-binding protein CML19 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
GSVIVT01010387001 No alias Probable calcium-binding protein CML31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os11g01390.1 LOC_Os11g01390 Probable calcium-binding protein CML25/26 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os12g01400.1 LOC_Os12g01400 Probable calcium-binding protein CML25/26 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc03g005040.1.1 CML39, CML37,... Probable calcium-binding protein CML31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 47 109
IPR002048 EF_hand_dom 171 197
No external refs found!