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  5. Pir_g28575

Pir_g28575


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g28575
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.04 OrthoFinder output from all 47 species
Adi_g004424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g007663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021679 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069220 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098198 SLO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099202 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26681 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46291 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06729 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g31959 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22058 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67763 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001369 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: CDS=172-2610 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010319 No alias not classified & original description: CDS=1-1401 0.03 OrthoFinder output from all 47 species
Cba_g06485 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77837 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.02 OrthoFinder output from all 47 species
Ceric.09G060800.1 Ceric.09G060800 not classified & original description: pacid=50588416... 0.03 OrthoFinder output from all 47 species
Ceric.27G006800.1 OTP86, Ceric.27G006800 not classified & original description: pacid=50605373... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.02 OrthoFinder output from all 47 species
Ceric.34G048600.1 Ceric.34G048600 not classified & original description: pacid=50623562... 0.03 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.02 OrthoFinder output from all 47 species
Dac_g07481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20347 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g26973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32437 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06429 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12887 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g43708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.02 OrthoFinder output from all 47 species
Len_g23141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07844 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38362 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Msp_g13253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g12725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15172 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16442 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20343 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01804 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03367 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04075 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16678 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40875 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30084 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54649 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61518 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63100 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.02 OrthoFinder output from all 47 species
Spa_g14020 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14608 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27926 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30016 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05999 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07560 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26745 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Zm00001e038850_P001 EMB2758, Zm00001e038850 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047746 chlorophyllase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 582 604
IPR002885 Pentatricopeptide_repeat 34 63
IPR002885 Pentatricopeptide_repeat 72 94
IPR002885 Pentatricopeptide_repeat 683 706
IPR002885 Pentatricopeptide_repeat 608 653
IPR002885 Pentatricopeptide_repeat 505 552
IPR002885 Pentatricopeptide_repeat 302 348
IPR002885 Pentatricopeptide_repeat 403 450
IPR002885 Pentatricopeptide_repeat 199 246
IPR002885 Pentatricopeptide_repeat 97 144
IPR002885 Pentatricopeptide_repeat 709 756
No external refs found!