Pir_g28539

Description : not classified & original description: none

Gene families : OG0000196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000196_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g28539
Cluster	HCCA: Cluster_251

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00177570	RPS2,...	Disease resistance protein RPS2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01014161001	No alias	Disease resistance protein At4g27190 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01017134001	No alias	Disease resistance protein SUMM2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
LOC_Os01g58530.1	RFL1, LOC_Os01g58530	Disease resistance protein SUMM2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10322161g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_733g0010	No alias	Probable disease resistance protein At1g15890...	0.03	OrthoFinder output from all 47 species
MA_90078g0010	No alias	Disease resistance protein RPS5 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_9565901g0010	No alias	Probable disease resistance protein At1g61310...	0.02	OrthoFinder output from all 47 species
Pp3c1_50V3.1	Pp3c1_50	disease resistance protein (TIR-NBS-LRR class)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	134	361

External Links

No external refs found!