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  5. AT5G26810

AT5G26810


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000078 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000078_tree ,
OG_02_0011469 (LandPlants) Phylogenetic Tree(s): OG_02_0011469_tree ,
OG_03_0002214 (SeedPlants) Phylogenetic Tree(s): OG_03_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G26810
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G47280 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G18990 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015022001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01028170001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01034985001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.03 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.03 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.03 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g19440.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os10g26680.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.05 Archaeplastida
MA_10428610g0020 No alias pectin methylesterase 0.06 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_19196g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_98283g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp4g01190.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_22810V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c8_460V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo101090 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc01g079180.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0009505 plant-type cell wall ISS Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 42 283
No external refs found!