AT5G26780 (SHM2)

Aliases : SHM2

Description : serine hydroxymethyltransferase 2

Gene families : OG_01_0000522 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000522_tree ,
OG_02_0003867 (LandPlants) Phylogenetic Tree(s): OG_02_0003867_tree ,
OG_03_0003997 (SeedPlants) Phylogenetic Tree(s): OG_03_0003997_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G26780
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00262120	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.serine...	0.04	Archaeplastida
AMTR_s00070p00192400	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.serine...	0.02	Archaeplastida
Cpa\|evm.model.tig00020903.24	No alias	Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre06.g293950	No alias	Amino acid metabolism.biosynthesis.serine...	0.02	Archaeplastida
GSVIVT01009226001	No alias	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.03	Archaeplastida
MA_11357g0010	No alias	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.03	Archaeplastida
Solyc04g076790.3.1	No alias	serine hydroxymethyltransferase	0.05	Archaeplastida
Solyc05g053810.3.1	No alias	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.04	Archaeplastida
Zm00001e021483_P001	No alias	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.03	Archaeplastida
GSVIVT01009226001	No alias	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.03	LandPlants
Solyc04g076790.3.1	No alias	serine hydroxymethyltransferase	0.05	LandPlants
GSVIVT01009226001	No alias	Photosynthesis.photorespiration.serine hydroxymethyltransferase	0.03	SeedPlants
Solyc04g076790.3.1	No alias	serine hydroxymethyltransferase	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005747	mitochondrial respiratory chain complex I	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	ISS	Interproscan
BP	GO:0006563	L-serine metabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IDA	Interproscan
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009746	response to hexose	None	Extended
BP	GO:0009749	response to glucose	RCA	Interproscan
BP	GO:0009750	response to fructose	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030964	NADH dehydrogenase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0045271	respiratory chain complex I	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0050897	cobalt ion binding	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098800	inner mitochondrial membrane protein complex	None	Extended
CC	GO:0098803	respiratory chain complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR039429	SHMT-like_dom	55	452

External Links

No external refs found!

AT5G26780 (SHM2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation