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  5. Pir_g26422

Pir_g26422


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g26422

Target Alias Description ECC score Gene Family Method Actions
AT5G53060 No alias RNA-binding KH domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g040691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07964 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ala_g15857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 48 107
IPR004088 KH_dom_type_1 294 342
IPR004088 KH_dom_type_1 159 226
IPR004088 KH_dom_type_1 374 441
No external refs found!