AT5G24930 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : CONSTANS-like 4


Gene families : OG_01_0000859 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000859_tree ,
OG_02_0001138 (LandPlants) Phylogenetic Tree(s): OG_02_0001138_tree ,
OG_03_0001151 (SeedPlants) Phylogenetic Tree(s): OG_03_0001151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G24930
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AMTR_s00019p00192190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
Cre12.g534100 No alias No description available 0.03 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os04g42020.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc08g006530.4.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.07 Archaeplastida
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 LandPlants
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 LandPlants
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.03 LandPlants
LOC_Os04g42020.1 No alias transcription factor (BBX-CO) 0.05 LandPlants
MA_7292g0010 No alias transcription factor (BBX-CO) 0.02 LandPlants
Pp3c2_31580V3.1 No alias CONSTANS-like 4 0.02 LandPlants
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Solyc08g006530.4.1 No alias transcription factor (BBX-CO) 0.03 LandPlants
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.05 LandPlants
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.05 LandPlants
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 SeedPlants
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 SeedPlants
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.03 SeedPlants
LOC_Os04g42020.1 No alias transcription factor (BBX-CO) 0.05 SeedPlants
MA_7292g0010 No alias transcription factor (BBX-CO) 0.02 SeedPlants
Solyc08g006530.4.1 No alias transcription factor (BBX-CO) 0.03 SeedPlants
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.04 SeedPlants
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade RCA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009617 response to bacterium RCA Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0030003 cellular cation homeostasis RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010402 CCT_domain 339 381
IPR000315 Znf_B-box 48 87
IPR000315 Znf_B-box 90 135
No external refs found!