AT5G24930 (ATCOL4, COL4)

Aliases : ATCOL4, COL4

Description : CONSTANS-like 4

Gene families : OG_01_0000859 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000859_tree ,
OG_02_0001138 (LandPlants) Phylogenetic Tree(s): OG_02_0001138_tree ,
OG_03_0001151 (SeedPlants) Phylogenetic Tree(s): OG_03_0001151_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G24930
Cluster	HCCA: Cluster_224

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00262710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AMTR_s00019p00192190	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Cre12.g534100	No alias	No description available	0.03	Archaeplastida
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
LOC_Os02g08150.1	No alias	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g39710.1	No alias	transcription factor (BBX-CO)	0.05	Archaeplastida
LOC_Os04g42020.1	No alias	transcription factor (BBX-CO)	0.05	Archaeplastida
LOC_Os06g44450.1	No alias	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os10g41100.1	No alias	Transcription factor GHD7 OS=Oryza sativa subsp....	0.04	Archaeplastida
Mp8g13470.1	No alias	transcription factor (BBX-CO)	0.03	Archaeplastida
Solyc07g006630.4.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc08g006530.4.1	No alias	transcription factor (BBX-CO)	0.03	Archaeplastida
Zm00001e002319_P001	No alias	Transcription factor GHD7 OS=Oryza sativa subsp....	0.04	Archaeplastida
Zm00001e007691_P001	No alias	transcription factor (BBX-CO)	0.05	Archaeplastida
Zm00001e037706_P002	No alias	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e037873_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e041152_P001	No alias	transcription factor (BBX-CO)	0.07	Archaeplastida
AMTR_s00006p00262710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	LandPlants
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	LandPlants
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	LandPlants
LOC_Os02g39710.1	No alias	transcription factor (BBX-CO)	0.03	LandPlants
LOC_Os04g42020.1	No alias	transcription factor (BBX-CO)	0.05	LandPlants
MA_7292g0010	No alias	transcription factor (BBX-CO)	0.02	LandPlants
Pp3c2_31580V3.1	No alias	CONSTANS-like 4	0.02	LandPlants
Solyc07g006630.4.1	No alias	no hits & (original description: none)	0.04	LandPlants
Solyc08g006530.4.1	No alias	transcription factor (BBX-CO)	0.03	LandPlants
Zm00001e007691_P001	No alias	transcription factor (BBX-CO)	0.05	LandPlants
Zm00001e041152_P001	No alias	transcription factor (BBX-CO)	0.05	LandPlants
AMTR_s00006p00262710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	SeedPlants
GSVIVT01036037001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	SeedPlants
GSVIVT01036499001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	SeedPlants
LOC_Os02g39710.1	No alias	transcription factor (BBX-CO)	0.03	SeedPlants
LOC_Os04g42020.1	No alias	transcription factor (BBX-CO)	0.05	SeedPlants
MA_7292g0010	No alias	transcription factor (BBX-CO)	0.02	SeedPlants
Solyc08g006530.4.1	No alias	transcription factor (BBX-CO)	0.03	SeedPlants
Zm00001e007691_P001	No alias	transcription factor (BBX-CO)	0.04	SeedPlants
Zm00001e041152_P001	No alias	transcription factor (BBX-CO)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	cellular cation homeostasis	RCA	Interproscan
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010402	CCT_domain	339	381
IPR000315	Znf_B-box	48	87
IPR000315	Znf_B-box	90	135

External Links

No external refs found!

AT5G24930 (ATCOL4, COL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation