AT5G24490

Description : 30S ribosomal protein, putative

Gene families : OG_01_0005738 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005738_tree ,
OG_02_0007364 (LandPlants) Phylogenetic Tree(s): OG_02_0007364_tree ,
OG_03_0006761 (SeedPlants) Phylogenetic Tree(s): OG_03_0006761_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G24490
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01038643001	No alias	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
Gb_00693	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.02	Archaeplastida
Mp5g07020.1	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.02	Archaeplastida
Solyc06g073090.3.1	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.05	Archaeplastida
GSVIVT01038643001	No alias	Protein biosynthesis.organelle translation...	0.04	LandPlants
Mp5g07020.1	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.02	LandPlants
Solyc06g073090.3.1	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.05	LandPlants
GSVIVT01038643001	No alias	Protein biosynthesis.organelle translation...	0.04	SeedPlants
Solyc06g073090.3.1	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.05	SeedPlants
Zm00001e006414_P001	No alias	plastidial ribosome hibernation-promoting factor (PSRP1)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032528	Ribosom_S30AE_C	228	281
IPR003489	RHF/RaiA	85	181

External Links

No external refs found!

AT5G24490

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation