AT5G24350


Description : CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG_01_0004940 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004940_tree ,
OG_02_0007713 (LandPlants) Phylogenetic Tree(s): OG_02_0007713_tree ,
OG_03_0006392 (SeedPlants) Phylogenetic Tree(s): OG_03_0006392_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G24350
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00267270 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00004p00267320 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.DSL1... 0.1 Archaeplastida
Cpa|evm.model.tig00000076.139 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.02 Archaeplastida
GSVIVT01038603001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.1 Archaeplastida
Gb_24496 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.11 Archaeplastida
LOC_Os12g13150.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.02 Archaeplastida
MA_10437135g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.12 Archaeplastida
MA_10437234g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_178977g0010 No alias MAG2-interacting protein 2 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_37482g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.1 Archaeplastida
Mp5g11790.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 Archaeplastida
Pp3c1_3140V3.1 No alias No annotation 0.15 Archaeplastida
Smo438861 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.08 Archaeplastida
Solyc03g082680.4.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.13 Archaeplastida
Zm00001e027951_P001 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 Archaeplastida
AMTR_s00004p00267320 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.DSL1... 0.09 LandPlants
GSVIVT01038603001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.09 LandPlants
Gb_24496 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.1 LandPlants
MA_10437135g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.08 LandPlants
MA_10437234g0010 No alias no hits & (original description: none) 0.06 LandPlants
Mp5g11790.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 LandPlants
Pp3c1_3140V3.1 No alias No annotation 0.13 LandPlants
Smo438861 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.07 LandPlants
Solyc03g082680.4.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.12 LandPlants
Zm00001e027951_P001 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 LandPlants
AMTR_s00004p00267320 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.DSL1... 0.09 SeedPlants
GSVIVT01038603001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.09 SeedPlants
Gb_24496 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.1 SeedPlants
LOC_Os12g13150.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.01 SeedPlants
MA_10437135g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.06 SeedPlants
MA_10437234g0010 No alias no hits & (original description: none) 0.05 SeedPlants
MA_37482g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.04 SeedPlants
Solyc03g082680.4.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.11 SeedPlants
Zm00001e027951_P001 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
BP GO:0009887 animal organ morphogenesis RCA Interproscan
BP GO:0009888 tissue development RCA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010638 positive regulation of organelle organization RCA Interproscan
BP GO:0016926 protein desumoylation RCA Interproscan
BP GO:0033044 regulation of chromosome organization RCA Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013244 Sec39_domain 913 1114
IPR013244 Sec39_domain 581 859
No external refs found!