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  5. Pir_g24946

Pir_g24946


Description : substrate(PAL) adaptor of SCF E3 ubiquitin ligase *(KFB-PAL) & original description: none


Gene families : OG0000998 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g24946
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT3G59940 No alias Galactose oxidase/kelch repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g10074 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aop_g07859 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ehy_g05024 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Gb_34880 No alias proteolytic phenylalanine ammonia-lyase regulator (KFB-PAL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g11790.1 LOC_Os02g11790 proteolytic phenylalanine ammonia-lyase regulator (KFB-PAL) 0.02 OrthoFinder output from all 47 species
MA_10305005g0020 No alias F-box/kelch-repeat protein At2g44130 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10434290g0020 No alias proteolytic phenylalanine ammonia-lyase regulator (KFB-PAL) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003410 No alias not classified & original description: CDS=1-1110 0.04 OrthoFinder output from all 47 species
Smo65366 No alias Secondary metabolism.phenolics.regulation of key... 0.03 OrthoFinder output from all 47 species
Solyc10g080610.1.1 Solyc10g080610 proteolytic phenylalanine ammonia-lyase regulator (KFB-PAL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 158 203
No external refs found!