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  5. Pir_g24287

Pir_g24287 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : pre-mRNA-processing protein *(PRP40C) & original description: none


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g24287

Target Alias Description ECC score Gene Family Method Actions
Adi_g011526 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene59393.t1 ATPRP40C,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_26149 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.07 OrthoFinder output from all 47 species
Pir_g11410 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 674 721
IPR002713 FF_domain 609 655
IPR002713 FF_domain 742 790
IPR001202 WW_dom 438 464
IPR001202 WW_dom 387 413
No external refs found!