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  5. Pir_g23554

Pir_g23554


Description : core component *(GAR1) of H/ACA snoRNP RNA pseudouridylation complex & original description: none


Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23554

Target Alias Description ECC score Gene Family Method Actions
Aop_g02745 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Pp3c5_28430V3.1 Pp3c5_28430 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011917 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Sam_g01576 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Solyc10g078540.3.1 Solyc10g078540 core component Gar1 of H/ACA small nucleolar... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 45 131
No external refs found!