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  5. Pir_g22600

Pir_g22600


Description : regulatory protein of DNA methylation pathway *(IDN/IDP) & original description: none


Gene families : OG0002563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g22600
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010889001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
GSVIVT01010892001 No alias Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
Sam_g50274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 124 234
IPR005381 Znf-XS_domain 43 85
IPR005379 FDM1-5/IDN2_XH 514 644
No external refs found!